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Getting Started

Perfect for newcomers to protein structure prediction

Articles
5 / 5
Estimated Time
2-3 hours

Learning Path

Follow this structured sequence to master getting started

1
Protein Folding: From Sequence to Structure
beginner25 min read

Protein Folding: From Sequence to Structure

A comprehensive guide to the fundamental principles of protein folding, from amino acids to AI-powered prediction.

biochemistrytutorialalphafold
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Protogen Team

Educators

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2
Understanding pLDDT Confidence Scores
Featured
beginner8 min read

Understanding pLDDT Confidence Scores

Learn how to interpret per-residue confidence scores from AlphaFold2 predictions and what they mean for your structural analysis.

alphafoldanalysistutorial
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Protogen Team

Computational Biologists

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3
AlphaFold2 vs ESMFold: When to Use Each
intermediate12 min read

AlphaFold2 vs ESMFold: When to Use Each

Compare the two leading protein structure prediction models and learn which one is best for your research needs.

alphafoldesmfoldresearch
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Protogen Team

ML Researchers

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4
Your First AlphaFold2 Prediction: A Complete Guide
beginner18 min read

Your First AlphaFold2 Prediction: A Complete Guide

Step-by-step walkthrough for running your first protein structure prediction with AlphaFold2, from sequence preparation to results analysis.

alphafoldtutorial
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Protogen Team

Computational Biologists

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5
Common Mistakes Beginners Make with AlphaFold2
beginner16 min read

Common Mistakes Beginners Make with AlphaFold2

Avoid the most frequent pitfalls when starting with protein structure prediction. Learn what to watch for and how to ensure reliable results.

alphafoldtutorialtutorial
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Protogen Team

Computational Biologists

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